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Publications 2008


D. Groth, S. Hartmann, G. Panopoulou, A.J. Poustka and S. Hennig (2008)
GOblet: annotation of anonymous sequence data with gene ontology and pathway terms.
Journal of integrative bioinformatics 5.

C. Guy, F. Kaplan, J. Kopka, J. Selbig and D.K. Hincha (2008)
Metabolomics of temperature stress.
Physiologia plantarum 132, 220–235.

S. Hartmann and T. Vision (2008)
Using ESTs for phylogenomics: Can one accurately infer a phylogenetic tree from a gappy alignment?.
BMC Evolutionary Biology 8, 95.

J.L. Heazlewood, P. Durek, J. Hummel, J. Selbig, W. Weckwerth, D. Walther and W.X. Schulze (2008)
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor.
Nucleic acids research 36, D1015–1021.

A.L. Hufton, D. Groth, M. Vingron, H. Lehrach, A.J. Poustka and G. Panopoulou (2008)
Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement.
Genome research 18, 1582–1591.

K. Kakar, M. Wandrey, T. Czechowski, T. Gaertner, W.-R. Scheible, M. Stitt, I. Torres-Jerez, Y. Xiao, J. Redman, H. Wu, F. Cheung, C. Town and M. Udvardi (2008)
A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula.
Plant Methods 4, 18.

K.I. Köhl, G. Basler, A. Lüdemann, J. Selbig and D. Walther (2008)
A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research.
Plant methods 4, 11.

J. Lisec, R.C. Meyer, M. Steinfath, H. Redestig, M. Becher, H. Witucka-Wall, O. Fiehn, O. Törjék, J. Selbig, T. Altmann and L. Willmitzer (2008)
Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations.
The Plant journal: for cell and molecular biology 53, 960–972.

J. Neigenfind, G. Gyetvai, R. Basekow, S. Diehl, U. Achenbach, C. Gebhardt, J. Selbig and B. Kersten (2008)
Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT.
BMC genomics 9, 356.

Z. Nikoloski, S. Grimbs, P. May and J. Selbig (2008)
Metabolic networks are NP-hard to reconstruct.
Journal of theoretical biology 254, 807–816.

N. Schauer, Y. Semel, I. Balbo, M. Steinfath, D. Repsilber, J. Selbig, T. Pleban, D. Zamir and A.R. Fernie (2008)
Mode of inheritance of primary metabolic traits in tomato.
The Plant cell 20, 509–523.

M. Steinfath, D. Groth, J. Lisec and J. Selbig (2008)
Metabolite profile analysis: from raw data to regression and classification.
Physiologia plantarum 132, 150–161.

S. Wienkoop, K. Morgenthal, F. Wolschin, M. Scholz, J. Selbig and W. Weckwerth (2008)
Integration of metabolomic and proteomic phenotypes: analysis of data covariance dissects starch and RFO metabolism from low and high temperature compensation response in Arabidopsis thaliana.
Molecular \& cellular proteomics: MCP 7, 1725–1736.