Publications

2025

Staacke T, Mueller-Roeber B, Balazadeh S. Stress resilience in plants: the complex interplay between heat stress memory and resetting. New Phytol. 2025 Mar; 245(6):2402-2421. https://doi.org/10.1111/nph.20377

Chopra P, Sapia N, Karami O, Kumar P, Honys D, Colombo L, Mendes M, Benhamed M, Fotopoulos V, Lieberman-Lazarovich M, Mueller-Roeber B, Kaiserli E, Hafidh S, Fragkostefanakis S. Priming thermotolerance: unlocking heat resilience for climate-smart crops. Philos Trans R Soc Lond B Biol Sci. 2025 May 29; 380(1927):20240234. https://doi.org/10.1098/rstb.2024.0234

2024

Gupta S, Petrov V, Garg V, Mueller-Roeber B, Fernie AR, Nikoloski Z, Gechev T. The genome of Haberlea rhodopensis provides insights into the mechanisms for tolerance to multiple extreme environments. Cell Mol Life Sci. 2024 Mar 5; 81(1):117. https://doi.org/10.1007/s00018-024-05140-3 

Bortolami G, de Werk TA, Larter M, Thonglim A, Mueller-Roeber B, Balazadeh S, Lens F. Integrating gene expression analysis and ecophysiological responses to water deficit in leaves of tomato plants. Sci Rep. 2024 Nov 22; 14(1):29024. https://doi.org/10.1038/s41598-024-80261-0

John S, Apelt F, Kumar A, Acosta IF, Bents D, Annunziata MG, Fichtner F, Gutjahr C, Mueller-Roeber B, Olas JJ. The transcription factor HSFA7b controls thermomemory at the shoot apical meristem by regulating ethylene biosynthesis and signaling in Arabidopsis. Plant Commun. 2024 Mar 11; 5(3):100743. https://doi.org/10.1016/j.xplc.2023.100743

Rahman H, Vikram P, Hu Y, Asthana S, Tanaji A, Suryanarayanan P, Quadros C, Mehta L, Shahid M, Gkanogiannis A, Thushar S, Balazadeh S, Mueller-Roeber B, Becerra Lopez-Lavalle LA, Wei T, Singh RK. Mining genomic regions associated with agronomic and biochemical traits in quinoa through GWAS. Sci Rep. 2024 Apr 22; 14(1):9205. https://doi.org/10.1038/s41598-024-59565-8

Olas JJ, Apelt F, Annunziata MG, John S, Richard SI, Gupta S, Kragler F, Balazadeh S, Mueller-Roeber B. Primary carbohydrate metabolism genes participate in heat-stress memory at the shoot apical meristem of Arabidopsis thaliana. Mol Plant. 2024 Apr 1; 17(4):676. https://doi.org/10.1016/j.molp.2024.03.010

2023

Dong, Y.; Gupta, S.; Wargent, J.J.; Putterill, J.; Macknight, R.C.; Gechev, T.S.; Mueller-Roeber, B.; Dijkwel, P.P. Comparative Transcriptomics of Multi-Stress Responses in Pachycladon cheesemanii and Arabidopsis thaliana. Int. J. Mol. Sci. 2023, 24, 11323. https://doi.org/10.3390/ijms241411323

Fabian Machens, Guangyao Ran, Ciaran Ruehmkorff, Julie Meyer auf der Heyde, Bernd Mueller-Roeber, and Lena Hochrein PhiReX 2.0: A Programmable and Red Light-Regulated CRISPR-dCas9 System for the Activation of Endogenous Genes in Saccharomyces cerevisiae. ACS Synthetic Biology 2023 12 (4), 1046-1057 DOI: 10.1021/acssynbio.2c00517

2022

• Ayatollahi, Z., Kazanaviciute, V., Shubchynskyy, V., Kvederaviciute, K., Schwanninger, M., Rozhon, W., Stumpe, M., Mauch, F., Bartels, S., Ulm, R., Balazadeh, S., Mueller-Roeber, B., Meskiene, I., Schweighofer, A. (2022) Dual control of MAPK activities by AP2C1 and MKP1 MAPK phosphatases regulates defence responses in Arabidopsis. J. Exp. Bot., Volume 73, Issue 8, 2369–2384, https://doi.org/10.1093/jxb/erac018
   
• Alshareef, N.O., Otterbach, S.L., Allu, A.D. et al. NAC transcription factors ATAF1 and ANAC055 affect the heat stress response in Arabidopsis. Sci Rep 12, 11264 (2022). https://doi.org/10.1038/s41598-022-14429-x
   
• Iman Tabatabaei, Saleh Alseekh, Mohammad Shahid, Ewa Leniak, Mateusz Wagner, Henda Mahmoudi, SumithaThushar, Alisdair R. Fernie, Kevin M. Murphy, Sandra M.Schmöckel, MarkTester, Bernd Mueller-Roeber, Aleksandra Skirycz & Salma Balazadeh. The diversity of quinoa morphological traits and seed metabolic composition. Sci Data 9, 323 (2022). https://doi.org/10.1038/s41597-022-01399-y 

2021

• Fichtner F, Barbier FF, Annunziata MG, Feil R, Olas JJ, Mueller-Roeber B, Stitt M, Beveridge CA, Lunn JE. (2021) Regulation of shoot branching in arabidopsis by trehalose 6-phosphate. New Phytol. 229: 2135-2151. PMID: 33068448.
   
• Rasul F, Gupta S, Olas JJ, Gechev T, Sujeeth N, Mueller-Roeber B. (2021) Priming with a Seaweed Extract Strongly Improves Drought Tolerance in Arabidopsis. Int J Mol Sci. 22: 1469. PMID: 33540571.
   
• Hasnat MA, Zupok A, Olas JJ, Mueller-Roeber B, Leimkühler S. (2021) A-Type Carrier Proteins Are Involved in [4Fe-4S] Cluster Insertion into the Radical S-Adenosylmethionine Protein MoaA for the Synthesis of Active Molybdoenzymes. J Bacteriol. 203: e0008621. PMID: 33782054.
   
• Sedaghatmehr M, Thirumalaikumar VP, Kamranfar I, Schulz K, Mueller-Roeber B, Sampathkumar A, Balazadeh S. (2021) Autophagy complements metalloprotease FtsH6 in degrading plastid heat shock protein HSP21 during heat stress recovery. J Exp Bot. 29: erab304. PMID: 34185061.
   
• Olas J.J., Apelt F., Annunziata M., John S., Richard S.I., Gupta S., Balazadeh S., Kragler F., Mueller-Roeber B. (2021) Primary carbohydrate metabolism genes participate in heat stress memory at the  shoot apical meristem of Arabidopsis thaliana.  Mol Plant. 14: 1508-1524. PMID: 34052393.
   
• S. John, J. Olas, B. Mueeler-Roeber (2021) Regulation of alternative splicing in response to temperature variation in plants. J Exp Bot. 72: 6150-6163. PMID: 34028544.

2020

• Naseri G, Mueller-Roeber B. (2020) A Step-by-Step Protocol for COMPASS, a Synthetic Biology Tool for Combinatorial Gene Assembly. Methods Mol Biol. 2205: 277-303. PMID: 32809205.
   
• Omidbakhshfard MA, Sujeeth N, Gupta S, Omranian N, Guinan KJ, Brotman Y, Nikoloski Z, Fernie AR, Mueller-Roeber B, Gechev TS. (2020) A Biostimulant Obtained from the Seaweed Ascophyllum nodosum Protects Arabidopsis thaliana from Severe Oxidative Stress. Int J Mol Sci. 21: 474. PMID: 31940839.
   
• Sujeeth N, Mehterov N, Gupta S, Qureshi MK, Fischer A, Proost S, Omidbakhshfard MA, Obata T, Benina M, Staykov N, Balazadeh S, Walther D, Fernie AR, Mueller-Roeber B, Hille J, Gechev TS. (2020) A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana. Cell Mol Life Sci. 77: 705-718. PMID: 31250033.
   
• Devkar V, Thirumalaikumar VP, Xue GP, Vallarino JG, Turečková V, Strnad M, Fernie AR, Hoefgen R, Mueller-Roeber B, Balazadeh S. (2020) Multifaceted regulatory function of tomato SlTAF1 in the response to salinity stress. New Phytol. 225: 1681-1698. PMID: 31597191.
   
• Durian G, Sedaghatmehr M, Matallana-Ramirez LP, Schilling SM, Schaepe S, Guerra T, Herde M, Witte CP, Mueller-Roeber B, Schulze WX, Balazadeh S, Romeis T. (2020) Calcium-Dependent Protein Kinase CPK1 Controls Cell Death by In Vivo Phosphorylation of Senescence Master Regulator ORE1. Plant Cell. 32: 1610-1625. PMID: 32111670.
   
• Faisal MB, Gechev TS, Mueller-Roeber B, Dijkwel PP. (2020) Putative alternative translation start site-encoding nucleotides of CPR5 regulate growth and resistance. BMC Plant Biol. 20: 295. PMID: 32600419.
   
• Kanojia A, Gupta S, Benina M, Fernie AR, Mueller-Roeber B, Gechev T, Dijkwel PP. (2020) Developmentally controlled changes during Arabidopsis leaf development indicate causes for loss of stress tolerance with age. J Exp Bot. 71: 6340-6354. PMID: 32720687.
   
• Moreno Curtidor C, Annunziata MG, Gupta S, Apelt F, Richard SI, Kragler F, Mueller-Roeber B, Olas JJ. (2020) Physiological Profiling of Embryos and Dormant Seeds in Two Arabidopsis Accessions Reveals a Metabolic Switch in Carbon Reserve Accumulation. Front Plant Sci. 11: 588433. PMID: 33343596.

2019

• Ma X, Balazadeh S, Mueller-Roeber B. (2019) Tomato fruit ripening factor NOR controls leaf senescence. J Exp Bot. 70: 2727-2740. PMID: 31002305.
   
• Naseri G, Behrend J, Rieper L, Mueller-Roeber B. (2019) COMPASS for rapid combinatorial optimization of biochemical pathways based on artificial transcription factors.  Nat Commun. 10: 2615. PMID: 31197154.
   
• Gupta S, Dong Y, Dijkwel PP, Mueller-Roeber B, Gechev TS. (2019) Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation. Int J Mol Sci. 20: 3101. PMID: 31242611.
   
• Yang L, Perrera V, Saplaoura E, Apelt F, Bahin M, Kramdi A, Olas J, Mueller-Roeber B, Sokolowska E, Zhang W, Li R, Pitzalis N, Heinlein M, Zhang S, Genovesio A, Colot V, Kragler F. (2019) m5C Methylation Guides Systemic Transport of Messenger RNA over Graft Junctions in Plants. Curr Biol. 29: 2465-2476. PMID: 31327714.
   
• Dong Y, Gupta S, Sievers R, Wargent JJ, Wheeler D, Putterill J, Macknight R, Gechev T, Mueller-Roeber B, Dijkwel PP. (2019) Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand's high ultraviolet B radiation environment. BMC Genomics 20: 838. PMID: 31718535.

2018

• Omidbakhshfard MA, Fujikura U, Olas JJ, Xue G-P, Balazadeh S, Mueller-Roeber B (2018) GROWTH-REGULATING FACTOR 9 negatively regulates Arabidopsis leaf growth by controlling ORG3 and restricting cell proliferation in leaf primordia. PLoS Genet. PMID: 29985961.

• Hochrein L, Mitchell LA, Schulz K, Messerschmidt K, Mueller-Roeber B (2018) L-SCRaMbLE as a tool for light-controlled Cre-mediated recombination in yeast. Nat Commun.  Nat Commun. 9: 1931. PMID: 29789561.

• Durgud M, Gupta S, Ivanov I, Omidbakhshfard A, Benina M, Alseekh S, Staykov N, Hauenstein M, Dijkwel P, Hörtensteiner S, Toneva V, Brotman Y, Fernie AR, Mueller-Roeber B, Gechev T (2018) Molecular mechanisms preventing senescence in response to prolonged darkness in a desiccation-tolerant plant.Plant Physiol. 177: 1319-1338. PMID: 29789435.

• Ma X, Zhang Y, Turečková V, Xue G-P, Fernie AR, Mueller-Roeber B, Balazadeh S (2018)  The NAC transcription factor SlNAP2 regulates leaf senescence and fruit yield in tomato. Plant Physiol. 177: 1286-1302. PMID: 29760199.

• Kamranfar I, Xue GP, Tohge T, Sedaghatmehr M, Fernie AR, Balazadeh S, Mueller-Roeber B (2018) Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence. New Phytol. 218: 1543-1557. PMID: 29659022. 

• Watanabe M, Tohge T, Balazadeh S, Erban A, Giavalisco P, Kopka J, Mueller-Roeber B, Fernie AR, Hoefgen R. (2018) Comprehensive metabolomics studies of plant developmental senescence. Methods Mol Biol. 1744: 339-358. PMID: 29392679.

2017

• Ebrahimian-Motlagh S, Ribone PA, Thirumalaikumar VP, Allu AD, Chan RL, Mueller-Roeber B, Balazadeh S (2017) JUNGBRUNNEN1 confers drought tolerance downstream of the HD-Zip I transcription factor AtHB13. Front Plant Sci. 8: 2118. PMID: 29326734.

• Sharma N, Dang TM, Singh N, Ruzicic S, Mueller-Roeber B, Baumann U, Heuer S (2018) Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice. Rice (N Y), 11: 2. PMID: 29313187.

• Machens F, Balazadeh S, Mueller-Roeber B, Messerschmidt K (2017) Synthetic promoters and transcription factors for heterologous protein expression in Saccharomycescerevisiae. Front. Bioeng. Biotechnol. 5: 63. PMID: 29098147.

• Hochrein L, Machens F, Messerschmidt K, Mueller-Roeber B (2017) PhiReX – a programmable and red light-regulated protein expression switch for yeast. Nucl. Acids Res. 45: 9193-9205. PMID: 28911120.

• Thirumalaikumar VP, Devkar V, Mehterov N, Ali S, Ozgur R, Turkan I, Mueller-Roeber B, Balazadeh S (2017) NAC transcription factor JUNGBRUNNEN1 enhances drought tolerance in tomato. Plant Biotechnol. J. 16: 354-366. PMID: 28640975.

• Naseri G, Balazadeh S, Machens F, Kamranfar I, Messerschmidt K, Mueller-Roeber B (2017) Plant-derived transcription factors for orthologous regulation of gene expression in the yeast Saccharomyces cerevisiae. ACS Synth Biol. 6: 1742-1756. PMID: 28531348.

• Czarnocka W, Van Der Kelen K, Willems P, Szechyńska-Hebda M, Shahnejat-Bushehri S, Balazadeh S, Rusaczonek A, Mueller-Roeber B, Van Breusegem F, Karpiński S (2017) The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator. Plant Cell Environ. 40: 2644-2662. PMID: 28555890.

• Hochrein L, Machens F, Gremmels J, Schulz K, Messerschmidt K, Mueller-Roeber B. (2017) AssemblX: a user-friendly toolkit for rapid and reliable multi-gene assemblies. Nucl. Acids Res. 6: 1742-1756.  PMID: 28130422.

• Shahnejat-Bushehri S, Allu AD, Mehterov N, Thirumalaikumar VP, Alseekh S, Fernie AR, Mueller-Roeber B, Balazadeh S (2017) Arabidopsis NAC transcription factor JUNGBRUNNEN1 exerts conserved control over gibberellin and brassinosteroid metabolism and signaling genes in tomato. Front. Plant Sci. 8: 214. PMID: 28326087.

• Shubchynskyy V, Boniecka J, Schweighofer A, Simulis J, Kvederaviciute K, Stumpe M, Mauch F, Balazadeh S, Mueller-Roeber B, Boutrot F, Zipfel C, Meskiene I. (2017) Protein phosphatase AP2C1 negatively regulates basal resistance and defense responses to Pseudomonas syringae. J Exp Bot. 68: 1169-1183. PMID: 28062592.

2016

• Sedaghatmehr M, Mueller-Roeber B, Balazadeh S. (2016) The plastid metalloprotease FtsH6 and small heat shock protein HSP21 jointly regulate thermomemory in Arabidopsis. Nat Commun. 26(7), 12439. PMID: 27561243.

• Messerschmidt K, Hochrein L, Dehm D, Schulz K, Mueller-Roeber B. (2016) Characterizing seamless ligation cloning extract for synthetic biological applications. Anal Biochem. 15(509), 24-32. PMID: 27311554.

• Omranian N, Eloundou-Mbebi JM, Mueller-Roeber B, Nikoloski Z. (2016) Gene regulatory network inference using fused LASSO on multiple data sets. Sci Rep. 11(6), 20533. PMID: 26864687.

• Hilker M, Schwachtje J, Baier M, Balazadeh S, Bäurle I, Geiselhardt S, Hincha DK, Kunze R, Mueller-Roeber B, Rillig MC, Rolff J, Romeis T, Schmülling T, Steppuhn A, van Dongen J, Whitcomb SJ, Wurst S, Zuther E, Kopka J. (2016) Priming and memory of stress responses in organisms lacking a nervous system. Biol Rev Camb Philos Soc. 91(4), 1118-1133. PMID: 26289992.

2015

• Lotkowska ME, Tohge T, Fernie AR, Xue GP, Balazadeh S, Mueller-Roeber B. (2015) The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress. Plant Physiol. 169(3), 1862-80. PMID: 26378103.

• Engqvist MK, Schmitz J, Gertzmann A, Florian A, Jaspert N, Arif M, Balazadeh S, Mueller-Roeber B, Fernie AR, Maurino VG. (2015) GLYCOLATE OXIDASE3, a Glycolate Oxidase Homolog of Yeast l-Lactate Cytochrome c Oxidoreductase, Supports l-Lactate Oxidation in Roots of Arabidopsis. Plant Physiol. 169(2), 1042-61. PMID: 26246447.

• Wang T, Tohge T, Ivakov A, Mueller-Roeber B, Fernie AR, Mutwil M, Schippers JH, Persson S. (2015) Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol. 169(2). 1027-41. PMID: 26243618.

• Garapati P, Feil R, Lunn JE, Van Dijck P, Balazadeh S, Mueller-Roeber B. (2015) Transcription Factor Arabidopsis Activating Factor1 Integrates Carbon Starvation Responses with Trehalose Metabolism. Plant Physiol. 169(1), 379-90. PMID: 26149570.

• Sree KS, Keresztes Á, Mueller-Roeber B, Brandt R, Eberius M, Fischer W, Appenroth KJ. (2015) Phytotoxicity of cobalt ions on the duckweed Lemna minor - Morphology, ion uptake, and starch accumulation. Chemosphere 131, 149-56. PMID: 25840119.

• Omranian N, Kleessen S, Tohge T, Klie S, Basler G, Mueller-Roeber B, Fernie AR, Nikoloski Z. (2015) Trends Plant Sci. 20(5), 266-8. Differential metabolic and coexpression networks of plant metabolism. PMID: 25791509.

• Omranian N, Mueller-Roeber B, Nikoloski Z. (2015) Segmentation of biological multivariate time-series data. Sci Rep. 11(5), 8937. PMID: 25758050.

• Petrov V, Hille J, Mueller-Roeber B, Gechev TS. (2015) ROS-mediated abiotic stress-induced programmed cell death in plants. Front Plant Sci. 18(6), 69. PMID: 25741354.

• Koeslin-Findeklee F, Rizi VS, Becker MA, Parra-Londono S, Arif M, Balazadeh S, Mueller-Roeber B, Kunze R, Horst WJ. (2015) Transcriptomic analysis of nitrogen starvation- and cultivar-specific leaf senescence in winter oilseed rape (Brassica napus L.). Plant Sci.233, 174-85. PMID: 25711825.

• Omidbakhshfard MA, Proost S, Fujikura U, Mueller-Roeber B. (2015) Growth-Regulating Factors (GRFs): A Small Transcription Factor Family with Important Functions in Plant Biology. Mol Plant. 8(7), 998-1010. PMID: 25620770.

• Proost S, Van Bel M, Vaneechoutte D, Van de Peer Y, Inzé D, Mueller-Roeber B, Vandepoele K. (2015) PLAZA 3.0: an access point for plant comparative genomics. Nucleic Acids Res. 43, D974-8. PMID: 25324309.

• Benina M, Ribeiro DM, Gechev TS, Mueller-Roeber B, Schippers JH. (2015) A cell type-specific view on the translation of mRNAs from ROS-responsive genes upon paraquat treatment of Arabidopsis thaliana leaves. Plant Cell Environ. 38(2), 349-63. PMID: 24738758.

2014

• Balazadeh S, Schildhauer J, Araújo WL, Munné-Bosch S, Fernie AR, Proost S, Humbeck K, Mueller-Roeber B. (2014) Reversal of senescence by N resupply to N-starved Arabidopsis thaliana: transcriptomic and metabolomic consequences. J Exp Bot. 65(14), 3975-92. PMID: 24692653.

• Gechev TS, Hille J, Woerdenbag HJ, Benina M, Mehterov N, Toneva V, Fernie AR, Mueller-Roeber B. (2014) Natural products from resurrection plants: potential for medical applications. Biotechnol Adv. 32(6), 1091-101. PMID: 24681091.

• Schmidt R, Caldana C, Mueller-Roeber B, Schippers JH. (2014) The contribution of SERF1 to root-to-shoot signaling during salinity stress in rice. Plant Signal Behav. 9(1), e27540. PMID: 24451326.

• Mettler T, Mühlhaus T, Hemme D, Schöttler MA, Rupprecht J, Idoine A, Veyel D, Pal SK, Yaneva-Roder L, Winck FV, Sommer F, Vosloh D, Seiwert B, Erban A, Burgos A, Arvidsson S, Schönfelder S, Arnold A, Günther M, Krause U, Lohse M, Kopka J, Nikoloski Z, Mueller-Roeber B, Willmitzer L, Bock R, Schroda M, Stitt M. (2014) Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii. Plant Cell. 2014 26(6), 2310-2350. PMID: 24894045.

• Omidbakhshfard MA, Winck FV, Arvidsson S, Riaño-Pachón DM, Mueller-Roeber B. (2014) A step-by-step protocol for formaldehyde-assisted isolation of regulatory elements from Arabidopsis thaliana. J Integr Plant Biol. 56(6), 527-38. PMID: 24373132.

• Lu D, Wang T, Persson S, Mueller-Roeber B, Schippers JH. (2014) Transcriptional control of ROS homeostasis by KUODA1 regulates cell expansion during leaf development. Nat Commun. 5, 3767. PMID: 24806884.

• Schmidt R, Schippers JH, Mieulet D, Watanabe M, Hoefgen R, Guiderdoni E, Mueller-Roeber B. (2014) SALT-RESPONSIVE ERF1 Is a negative regulator of grain filling and gibberellin-mediated seedling establishment in rice. Mol Plant, 7(2), 404-21. PMID: 24046061.

• Mueller-Roeber B, Balazadeh S (2014) Auxin and its role in plant senescence. J. Plant Growth Reg., Volume 33, Issue 1, pp 21–33.

2013

• Ay N, Raum U, Balazadeh S, Seidensticker T, Fischer A, Reuter G, Humbeck K (2013) Regulatory factors of leaf senescence are affected in Arabidopsis plants overexpressing the histone methyltransferase SUVH2. J. Plant Growth Reg., Volume 33, Issue 1, pp 119–136.

• Winck VF, Arvidsson S, Riaño-Pachón DM, Hempel S, Koseska A, Nikoloski Z, Urbina Gomez DA, Rupprecht J, Mueller-Roeber B. (2013) Genome-wide identification of regulatory elements and reconstruction of gene regulatory networks of the green alga Chlamydomonasreinhardtii under carbon deprivation. PLoS One, 8(11), e79909. PMID: 24224019.

• Schippers JH, Lai AG, Mueller-Roeber B, Dijkwel PP. (2013) Could ROS signals drive tissue-specific clocks? Transcription, 4(5), 206-8. PMID: 24135705.

• Lukoszek R1, Mueller-Roeber B, Ignatova Z. (2013) Interplay between polymerase II- and polymerase III-assisted expression of overlapping genes. FEBS Lett. 2013 Nov 15;587(22):3692-5. PMID: 24113658.

• Gliwicka M, Nowak K, Balazadeh S, Mueller-Roeber B, Gaj MD. (2013) Extensive modulation of the transcription factor transcriptome during somatic embryogenesis in Arabidopsis thaliana. PLoS One 8(7), e69261. PMID: 23874927.

• Schmidt R, Schippers JH, Mieulet D, Obata T, Fernie AR, Guiderdoni E, Mueller-Roeber B. (2013) MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways. Plant J. 76(2), 258-73. PMID: 23855375.

• Schmidt R, Mieulet D, Hubberten HM, Obata T, Hoefgen R, Fernie AR, Fisahn J, San Segundo B, Guiderdoni E, Schippers JH, Mueller-Roeber B. (2013) Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice. Plant Cell 25(6), 2115-31. PMID: 23800963.
  .
• Scarpeci TE, Zanor MI, Mueller-Roeber B, Valle EM. (2013) Overexpression of AtWRKY30 enhances abiotic stress tolerance during early growth stages in Arabidopsis thaliana. Plant Mol Biol. 83(3), 265-77. PMID: 23794142.

• Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, et al. (2013) Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature 499(7457), 209-13. PMID: 23760476.

• Watanabe M, Balazadeh S, Tohge T, Erban A, Giavalisco P, Kopka J, Mueller-Roeber B, Fernie AR, Hoefgen R. (2013) Comprehensive dissection of spatiotemporal metabolic shifts in primary, secondary, and lipid metabolism during developmental senescence in Arabidopsis. Plant Physiol. 162(3), 1290-310. PMID: 23696093.

• Omranian N, Klie S, Mueller-Roeber B, Nikoloski Z. (2013) Network-based segmentation of biological multivariate time series. PLoS One 8(5), e62974. PMID: 23667552.

• Mehrnia M, Balazadeh S, Zanor MI, Mueller-Roeber B. (2013) EBE, an AP2/ERF transcription factor highly expressed in proliferating cells, affects shoot architecture in Arabidopsis. Plant Physiol. 162(2), 842-57. PMID: 23616605.

• Rauf M, Arif M, Dortay H, Matallana-Ramírez LP, Waters MT, Gil Nam H, Lim PO, Mueller-Roeber B, Balazadeh S. (2013) ORE1 balances leaf senescence against maintenance by antagonizing G2-like-mediated transcription. EMBO Rep. 14(4), 382-8. PMID: 23459204.

• Matallana-Ramirez LP, Rauf M, Farage-Barhom S, Dortay H, Xue GP, Dröge-Laser W, Lers A, Balazadeh S, Mueller-Roeber B. (2013) NAC transcription factor ORE1 and senescence-induced BIFUNCTIONAL NUCLEASE1 (BFN1) constitute a regulatory cascade in Arabidopsis. Mol Plant. 6(5),1438-52. PMID: 23340744.

• Nguyen HM, Schippers JH, Gõni-Ramos O, Christoph MP, Dortay H, van der Hoorn RA, Mueller-Roeber B. (2013) An upstream regulator of the 26S proteasome modulates organ size in Arabidopsisthaliana. Plant J. 74(1), 25-36. PMID: 23252408.

• Ribeiro DM, Mueller-Roeber B, Schippers JH. (2013) Promotion of growth by elevated carbon dioxide is coordinated through a flexible transcriptional network in Arabidopsis. Plant Signal Behav. 8(3), PMID: 23333969.

• Gechev TS, Benina M, Obata T, Tohge T, Sujeeth N, Minkov I, Hille J, Temanni MR, Marriott AS, Bergström E, Thomas-Oates J, Antonio C, Mueller-Roeber B, Schippers JH, Fernie AR, Toneva V. (2013) Molecular mechanisms of desiccation tolerance in the resurrection glacial relic Haberlearhodopensis. Cell Mol Life Sci. 70(4),689-709. PMID: 22996258.

2012

• Balazadeh S, Jaspert N, Arif M, Mueller-Roeber B, Maurino VG. (2012) Expression of ROS-responsive genes and transcription factors after metabolic formation of H2O2 in chloroplasts. Front Plant Sci. 3, 234. PMID: 23125844.

• Ribeiro DM, Araújo WL, Fernie AR, Schippers JH, Mueller-Roeber B. (2012) Action of gibberellins on growth and metabolism of Arabidopsis plants associated with high concentration of carbon dioxide. Plant Physiol. 160, 1781-1794. PMID: 23090585.

• Shahnejat-Bushehri S, Balazadeh S, Mueller-Roeber B. (2012) Arabidopsis NAC transcription factor JUNGBRUNNEN1 affects thermomemory-associated genes and enhances heat stress tolerance in primed and unprimed conditions. Plant Signal Behav. 7, 12. PMID: 23073024.

• Lai AG, Doherty CJ, Mueller-Roeber B, Kay SA, Schippers JH, Dijkwel PP. (2012) CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses. Proc Natl Acad Sci USA. 109, 17129-17134. PMID: 23027948.

• Omidbakhshfard MA, Omranian N, Ahmadi FS, Nikoloski Z, Mueller-Roeber B. (2012) Effect of salt stress on genes encoding translation-associated proteins in Arabidopsis thaliana. Plant Signal Behav. 7, 1095-1102. PMID: 22899071.

• Schippers JH, Nguyen HM, Lu D, Schmidt R, Mueller-Roeber B. (2012) ROS homeostasis during development: an evolutionary conserved strategy. Cell Mol Life Sci. 69, 3245-3257. PMID: 22842779.

• Mehterov N, Balazadeh S, Hille J, Toneva V, Mueller-Roeber B, Gechev T. (2012) Oxidative stress provokes distinct transcriptional responses in the stress-tolerant atr7 and stress-sensitive loh2 Arabidopsis thaliana mutants as revealed by multi-parallel quantitative real-time PCR analysis of ROS marker and antioxidant genes. Plant Physiol. Biochem. 59, 20-29. PMID: 22710144.

• Schmidt, R., Schippers, JHM, Welker, A., Mieulet, D., Guiderdoni, E., Mueller-Roeber, B. (2012) Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa (L.) ssp. japonica. AoB Plants, pls011. PMID: 22616023.

• Wu A, Allu AD, Garapati P, Siddiqui H, Dortay H, Zanor M-I, Asensi-Fabado MA, Munné-Bosch S, Antonio C, Tohge T, Fernie AR, Kaufmann K, Xue G-P, Mueller-Roeber B, Balazadeh S (2012) JUNGBRUNNEN1, a reactive oxygen species-responsive NAC transcription factor, regulates longevity in Arabidopsis. Plant Cell 24, 482-506. PMID: 22345491.

• Sakuraba Y, Balazadeh S, Tanaka R, Mueller-Roeber B, Tanaka A (2012) Overproduction of chlorophyll b retards senescence through transcriptional re-programming in Arabidopsis. Plant Cell Physiol. 53, 505-517. PMID: 22285931.

• Brotman Y, Landau U, Pnini S, Lisec J, Balazadeh S, Mueller-Roeber B, Zilberstein A, Willmitzer L, Chet I, Viterbo A (2012) The LysM receptor-like kinase LysM RLK1 is required to activate defense and abiotic-stress responses induced by over-expression of fungal chitinases in Arabidopsis plants. Mol Plant 5, 1113-1124. PMID: 22461667.

• Omranian N, Mueller-Roeber B, Nikoloski Z (2012) PageRank-based identification of signaling crosstalk from transcriptomics data: the case of Arabidopsis thaliana. Molecular BioSystems 8, 1121-1127. PMID: 22327945.

• Ribeiro DM, Araújo WL, Fernie AR, Schippers JHM, Mueller-Roeber B (2012) Translatome and metabolome effects triggered by gibberellins during rosette growth in Arabidopsis. J. Exp. Bot. 63, 2769-2786. PMID: 22291129.

• Winck FV, Riaño-Pachón DM, Sommer F, Rupprecht J, Mueller-Roeber B. (2012) The nuclear proteome of the green alga Chlamydomonas reinhardtii. Proteomics 12(1), 95-100. PMID: 22065562.

• Wang WH, Köhler B, Cao FQ, Liu GW, Gong YY, Sheng S, Song QC, Cheng XY, Garnett T, Okamoto M, Qin R, Mueller-Roeber B, Tester M, Liu LH.  (2012) Rice DUR3 mediates high-affinity urea transport and plays an effective role in improvement of urea acquisition and utilization when expressed in Arabidopsis. New Phytol. 193(2), 432-44. PMID: 22010949.

2011

• Rohrmann J, Tohge T, Alba R, Osorio S, Caldana C, McQuinn R, Arvidsson S, van der Merwe MJ, Riaño-Pachón DM, Mueller-Roeber B, Fei Z, Nesi AN, Giovannoni JJ, Fernie AR. (2011) Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development. Plant J. 68(6), 999-1013. PMID: 21851430.

• Maîtrejean M, Wudick MM, Voelker C, Prinsi B, Mueller-Roeber B, Czempinski K, Pedrazzini E, Vitale A. (2011) Assembly and sorting of the tonoplast potassium channel AtTPK1 and its turnover by internalization into the vacuole. Plant Physiol. 156(4), 1783-96. PMID: 21697507.

• Lai AG, Denton-Giles M, Mueller-Roeber B, Schippers JH, Dijkwel PP. (2011) Positional information resolves structural variations and uncovers an evolutionarily divergent genetic locus in accessions of Arabidopsisthaliana. Genome Biol Evol. 3, 627-40. PMID: 21622917.

• Arvidsson S, Pérez-Rodríguez P, Mueller-Roeber B. (2011) A growth phenotyping pipeline for Arabidopsisthaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects. New Phytol. 191(3), 895-907. PMID: 21569033.

• Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL, Bonawitz ND, Chapple C, Cheng C, Correa LG, Dacre M, DeBarry J, Dreyer I, Elias M, Engstrom EM, Estelle M, Feng L, Finet C, Floyd SK, Frommer WB, Fujita T, Gramzow L, Gutensohn M, Harholt J, Hattori M, Heyl A, Hirai T, Hiwatashi Y, Ishikawa M, Iwata M, Karol KG, Koehler B, Kolukisaoglu U, Kubo M, Kurata T, Lalonde S, Li K, Li Y, Litt A, Lyons E, Manning G, Maruyama T, Michael TP, Mikami K, Miyazaki S, Morinaga S, Murata T, Mueller-Roeber B, Nelson DR, Obara M, Oguri Y, Olmstead RG, Onodera N, Petersen BL, Pils B, Prigge M, Rensing SA, Riaño-Pachón DM, Roberts AW, Sato Y, Scheller HV, Schulz B, Schulz C, Shakirov EV, Shibagaki N, Shinohara N, Shippen DE, Sørensen I, Sotooka R, Sugimoto N, Sugita M, Sumikawa N, Tanurdzic M, Theissen G, Ulvskov P, Wakazuki S, Weng JK, Willats WW, Wipf D, Wolf PG, Yang L, Zimmer AD, Zhu Q, Mitros T, Hellsten U, Loqué D, Otillar R, Salamov A, Schmutz J, Shapiro H, Lindquist E, Lucas S, Rokhsar D, Grigoriev IV. (2011) The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science. 332(6032), 960-3. PMID: 21551031.

• Dortay H, Akula UM, Westphal C, Sittig M, Mueller-Roeber B. (2011) High-throughput protein expression using a combination of ligation-independent cloning (LIC) and infrared fluorescent protein (IFP) detection. PLoS One. 6(4), e18900. PMID: 21541323.

• Dortay H, Schmöckel SM, Fettke J, Mueller-Roeber B. (2011) Expression of human c-reactive protein in different systems and its purification from Leishmania tarentolae. Protein Expr Purif. 78(1), 55-60. PMID: 21440634.

• Parlitz S, Kunze R, Mueller-Roeber B, Balazadeh S. (2011) Regulation of photosynthesis and transcription factor expression by leaf shading and re-illumination in Arabidopsisthaliana leaves. J Plant Physiol. 168(12), 1311-9. PMID: 21377757.

• Balazadeh S, Kwasniewski M, Caldana C, Mehrnia M, Zanor MI, Xue GP, Mueller-Roeber B. (2011) ORS1, an H2O2-responsive NAC transcription factor, controls senescence in Arabidopsis thaliana. Mol Plant. 4(2), 346-60. PMID: 21303842.

• Zhang G, Lukoszek R, Mueller-Roeber B, Ignatova Z. (2011) Different sequence signatures in the upstream regions of plant and animal tRNA genes shape distinct modes of regulation.Nucleic Acids Res. 39(8), 3331-9. PMID: 21138970.

2010

• Lang D, Weiche B, Timmerhaus G, Richardt S, Riaño-Pachón DM, Corrêa LG, Reski R, Mueller-Roeber B, Rensing SA. (2010) Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. Genome Biol Evol. 2, 488-503. PMID: 20644220.

• Balazadeh S, Wu A, Mueller-Roeber B. (2010) Salt-triggered expression of the ANAC092-dependent senescence regulon in Arabidopsisthaliana. Plant Signal Behav. 5(6), 733-5. PMID: 20404534.

• Balazadeh S, Siddiqui H, Allu AD, Matallana-Ramirez LP, Caldana C, Mehrnia M, Zanor MI, Köhler B, Mueller-Roeber B. (2010) A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence. Plant J. 62(2), 250-64. PMID: 20113437.

• Voelker C, Gomez-Porras JL, Becker D, Hamamoto S, Uozumi N, Gambale F, Mueller-Roeber B, Czempinski K, Dreyer I. (2010) Roles of tandem-pore K+ channels in plants - a puzzle still to be solved. Plant Biol 12, Suppl 1, 56-63. PMID: 20712621.

• Dortay H, Mueller-Roeber B. (2010) A highly efficient pipeline for protein expression in Leishmaniatarentolae using infrared fluorescence protein as marker. Microb Cell Fact. 9, 29. PMID: 20459748.

• Kwasniewski M, Janiak A, Mueller-Roeber B, Szarejko I. (2010) Global analysis of the root hair morphogenesis transcriptome reveals new candidate genes involved in root hair formation in barley. J Plant Physiol. 167(13), 1076-83. PMID: 20388575.

• Krebs J, Mueller-Roeber B, Ruzicic S. (2010) A novel bipartite nuclear localization signal with an atypically long linker in DOF transcription factors. J Plant Physiol. 167(7), 583-6. PMID: 20116130.

• Riedelsberger J, Sharma T, Gonzalez W, Gajdanowicz P, Morales-Navarro SE, Garcia-Mata C, Mueller-Roeber B, González-Nilo FD, Blatt MR, Dreyer I. (2010) Distributed structures underlie gating differences between the kin channel KAT1 and the Kout channel SKOR. Mol Plant. 3(1), 236-45. PMID: 20007672.

• Pérez-Rodríguez P, Riaño-Pachón DM, Corrêa LG, Rensing SA, Kersten B, Mueller-Roeber B. (2010) PlnTFDB: updated content and new features of the plant transcription factor database. Nucleic Acids Res. 38, (Database issue): D822-7. PMID: 19858103.

2009

• Mueller-Roeber B, Arvidsson S. (2009) Fertility control: the role of magnesium transporters in pollen development. Cell Res. 19, 800-801. PMID: 19581878.

• Szarzynska, B., Sobkowiak, L., Pant, B.D., Balazadeh, S., Scheible, W.R., Mueller-Roeber, B., Jarmolowski, A., Szweykowska-Kulinska, Z. (2009) Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs. Nucleic Acids Res. 37(9), 3083-93. PMID: 19304749.

• Dreyer, I., and Blatt, M.R. (2009) What makes a gate? The ins and outs of Kv-like K+ channels in plants. Trends Plant Sci. 14(7), 383-90.

• Naso, A., Dreyer, I., Pedemonte, L., Testa, I., Gomez-Porras, J.L., Usai, C., Mueller-Roeber, B., Diaspro, A., Gambale, F., and Picco, C. (2009) The role of the C-terminus for functional heteromerization of the plant channel KDC1. Biophys. Biophys J. 20, 96(10), 4063-74. PMID: 19450478.

• Gajdanowicz, P., Garcia-Mata, C., Gonzalez, W., Morales-Navarro, S.E., Sharma, T., Danilo Gonzáles-Nilo, F., Gutowicz, J., Mueller-Roeber, B., Blatt, M.R. and Dreyer, I. (2009) Distinct roles of the last transmembrane domain in controlling Arabidopsis K+ channel activity.New Phytol. 182, 380-391. PMID: 19192193.

2008

• Arvidsson, S., Kwasniewski, M., Riaño-Pachón, D.M. and Mueller-Roeber, B. (2008) QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative PCR.BMC Bioinformatics 9, 465. PMID: 18976492.

• Dortay, H., Gruhn, N., Pfeifer, A., Schwerdtner, M., Schmülling, T. and Heyl, A. (2008) Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana.J Proteome Res. 7, 3649-3660. PMID: 18642946.

• Riaño-Pachón, D.M., Nagel, A., Neigenfind, J., Wagner, R., Basekow, R., Weber, E., Mueller-Roeber, B., Diehl, S. and Kersten, B. (2008) GabiPD: The GABI Primary Database – a plant integrative ´omics´ database. Nucl. Acids Res. 37 (Database issue):D954-9. PMID: 18812395.

• Corrêa, L.G.G., Riaño-Pachón, D.M., Schrago, C.G., dos Santos, R.V., Mueller-Roeber, B. and Vincentz, M. (2008) The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS One 3(8):e2944. PMID: 18698409.

• Skirycz, A., Radziejwoski, A., Busch, W., Hannah, M., Czeszejko, J., Kwasniewski, M., Zanor, Lohmann, J.U., De Veylder, L., Witt, I. and Mueller-Roeber, B. (2008) DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thaliana. Plant Journal 56, 779-792. PMID: 18665917.

• Wei-Hong Wang, Barbara Köhler, Feng-Qiu Cao and Lai-Hua Liu (2008) Molecular and physiological aspects of urea transport in higher plants. Plant Science 175, 467–477.

• Falkenberg, B., Witt, I., Zanor, M.-I., Steinhauser, D., Mueller-Roeber, B., Hesse, H. and Hoefgen, H. (2008) Transcription factors relevant to auxin signalling coordinate broad-spectrum metabolic shifts including sulphur metabolism. J. Exp. Bot. 59, 2831-2846. PMID: 18596113.

• Balazadeh, S., Parlitz, S., Mueller-Roeber, B., Meyer, R. (2008) Natural variation for developmental leaf and plant senescence in Arabidopsis thaliana. Plant Biol. Suppl. 1, 136-147. PMID: 18721318.

• Lebaudy, A., Hosy, E., Simonneau, T., Sentenac, H., Thibaud, J.B., Dreyer, I. (2008) Heteromeric K+ channels in plants. Plant J. 54, 1076-1082. PMID: 18346194.

• Lebaudy, A., Vavasseur, A., Hosy, E., Dreyer, I., Leonhardt, N., Thibaud, J.B., Véry, A.A., Simonneau, T., Sentenac, H. (2008) Plant adaptation to fluctuating environment and biomass production are strongly dependent on guard cell potassium channels. Proc. Natl. Acad. Sci. USA 105, 5271-5276. PMID: 18367672.

• Balazadeh, S., Riaño-Pachón, D.M., Mueller-Roeber, B. (2008) Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol. Suppl. 1, 63-75. PMID: 18721312.

• Riaño-Pachón, D.M., Corrêa, L-G.G., Espinosa, R., Mueller-Roeber, B. (2008): Green transcription factors: a Chlamydomonas overview. Genetics 179, 31-39. PMID: 18493038.

• Scarpeci, T.E., Zanor, M.-I., Carrillo, N., Mueller-Roeber, B., Valle, E.M. (2008) Generation of superoxide anion in chloroplasts of Arabidopsis thaliana during active photosynthesis: a focus on rapidly induced genes. Plant Mol. Biol. 66, 361-378. PMID: 18158584.

• Yang, L., Tang, R.-J., Zhu, J., Liu, H., Mueller-Roeber, B., Xia, H.-J., Zhang, H.-X. (2008) Enhancement of stress tolerance in transgenic tobacco plants constitutively expressing AtIpk2ß, an inositol polyphosphate 6-/3-kinase from Arabidopsis thaliana. Plant Mol. Biol. 66, 329-343. PMID: 18165921.

• Müller-Röber, B. (2008) Grüne Gentechnologie: aktueller Stand und Perspektiven für die Zukunft. Journal für Verbraucherschutz und Lebensmittelsicherheit.

2007

• Boysen, M., Domasch, S., Müller-Röber, B. (2007) Interdisziplinäre Arbeitsgruppe Gentechnologiebericht. Jahrbuch 2007 der Berlin-Brandenburgischen Akademie der Wissenschaften.

• Ruzicic, S., Caldana, C., Soltaninajafabadi, M., Riaño-Pachón, D.M., Mueller-Roeber, B. (2007) Transcription factor networks controlling the initial phase of the abiotic stress response in rice (Oryza sativa L.). Proceedings of the 2nd International Conference on Rice for the Future. Thailand, Nov. 2007.

• Merchant, S.S., Prochnik, S.E., Vallon, O. et al. (2007) The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318, 245-251. PMID: 17932292.

• Gobert A., Isayenkov S., Voelker C., Czempinski K. and Maathuis, F. (2007) The two-pore channel TPK1 gene encodes the vacuolar K+ conductance and plays a role in K+ homeostasis. Proc. Natl. Acad. Sci. USA 19, 10726-10731. PMID: 17563365.

• Jörg Schmidtke, Bernd Müller-Röber, Wofgang van den Daele, Ferdinand Hucho, Kristian Köchy, Karl Sperling, Jens Reich, Hans-Jörg Rheinberger, Anna M. Wobus, Mathias Boysen, Silke Domasch (Hrsg.) (2007) Gendiagnostik in Deutschland: Status quo und Problemerkundung. Supplement zum Gentechnologiebericht. Forum W - Wissenschaftlicher, Limburg an der Lahn.

• Mueller-Roeber, B., Dreyer, I. (2007) Ion homeostasis: plants feel better with proper control. EMBO Rep. 8, 735-736.

• Gómez-Porras, J.L., Riaño-Pachón, D.M., Dreyer, I., Mayer, J.E., Mueller-Roeber, B. (2007) Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice. BMC Genomics 8, 260. PMID: 17672917. Marked as "Highly accessed".

• Caldana, C., Scheible, W.-R., Mueller-Roeber, B., Ruzicic, S. (2007) A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors. Plant Methods 3, 7. Marked as "Highly accessed".

• Skirycz, A., Jozefczuk, S., Stobiecki, M., Muth, D., Zanor, M.-I., Witt, I., Mueller-Roeber, B. (2007) Transcription factor AtDOF4;2 influences phenylpropanoid metabolism in Arabidopsis thaliana. New Phytol. 175: 425-438. PMID: 17635218.

• Riano-Pachon, D., Ruzicic, S., Dreyer, I., Mueller-Roeber, B. (2007) PlnTFDB: An integrative plant transcription factor database. BMC Bioinformatics 8, 42. Marked as "Highly accessed". PMID: 17286856.

• Suh, J., Wang, Y.-F., Frelet, A., Leonhardt, N., Klein, M., Forestier, C., Mueller-Roeber, B., Cho, M., Martinoia, E., Schroeder, J. (2007) The ATP binding cassette transporter AtMRP5 modulates anion and Ca2+ channel activities in Arabidopsis guard cells. J. Biol Chem. 282, 1916-24; Epub November 10, 2006. PMID: 17098742.

• Bernd Müller-Röber, Ferdinand Hucho, Wofgang van den Daele, Kristian Köchy, Jens Reich, Hans-Jörg Rheinberger, Karl Sperling, Anna M. Wobus, Mathias Boysen, Meike Kölsch (2007) Grüne Gentechnologie: Aktuelle Entwicklungen in Wissenschaft und Wirtschaft. Supplement zum Gentechnologiebericht. Elsevier Spektrum Akademischer Verlag, Heidelberg, Berlin.

2006

• Stobiecki, M., Skirycz, A., Kerhoas, L., Kachlicki, P., Muth, D., Einhorn, J., Mueller-Roeber, B. (2006) Profiling of phenolic glycosidic conjugates in leaves of Arabidopsis thaliana using LC-MS. Metabolomics. 4, 197-219; DOI 10.1007/s11306-006-0031-5.

• Voelker, C., Schmidt, D., Mueller-Roeber, B., Czempinski, K. (2006) Members of the Arabidopsis AtTPK/KCO family form homomeric vacuolar channels in planta. Plant J. 48, 296-306. PMID: 16984403

• Anna M. Wobus, Ferdinand Hucho, Wofgang van den Daele, Kristian Köchy, Jens Reich, Hans-Jörg Rheinberger, Bernd Müller-Röber, Karl Sperling, Mathias Boysen, Meike Kölsch (2006) Stammzellforschung und Zelltherapie. Stand des Wissens und der Rahmenbedingungen in Deutschland. Supplement zum Gentechnologiebericht. Spektrum Akademischer Verlag, Heidelberg, Berlin.

• Skirycz, A., Reichelt, M., Birkemeyer, C., Rolcik J., Kopka, J., Zanor, M.-I., Gershenzon, J., Strand, M., Szopa, J., Mueller-Roeber, B., Witt, I. (2006) DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis. Plant J. 47, 10-24. PMID: 16740150.

• Kreft, O., Georgieva, R., Bäumler, H., Steup, M., Müller-Röber, B., Sukhorukov, G.B., Möhwald, H. (2006) Red blood cell templated polyelectrolyte capsules: a novel vehicle for the stable encapsulation of DNA and Proteins. Macromol. Rapid Comm. 27, 435-440.

• Feng, X.-L., Ni, W.-M., Elge, S., Mueller-Roeber, B., Xu, Z.-H., Xue, H.-W. (2006) Auxin flow in anther filaments is critical for pollen grain development through regulating pollen mitosis. Plant Mol. Biol. 61, 215-226. PMID: 16786302.

• Johansson, I., Wulfetange, K., Porée, F., Michard, E., Gajdanowicz, P., Lacombe, B., Sentenac, H., Thibaud, J.-B., Mueller-Roeber, B., Blatt, M.R., Dreyer, I. (2006) External K+ modulates the activity of the Arabidopsis potassium channel SKOR via an unusual mechanism. Plant J. 46, 269-281. PMID: 16623889.

• Lou, Y., Ma, H., Lin, W.-H., Chu, Z.-Q., Mueller-Roeber, B., Xu, Z.-H., Xue, H.-W. (2006) The highly charged region of plant β-type phosphatidylinositol 4-kinase is involved in membrane targeting and phospholipid binding. Plant Mol. Biol. 60, 729-746. PMID: 16649109.

2005

• Michard, E., Lacombe, B., Porée, F., Mueller-Roeber, B., Sentenac, H., Thibaud, J.-B., Dreyer, I. (2005): A unique voltage-sensor sensitizes the potassium channel AKT2 to phosphoregulation. J. Gen. Physiol. 126, 605-617. PMID: 16316977.

• Müller-Röber, B. (2005) Grüne Gentechnik für nachwachsende Rohstoffe. (Eingeladenes Editorial), BioSpektrum, 6 / 2005, 704.

• Gómez-Merino, F.C., Arana-Ceballos, F.A., Trejo-Téllez, L.I., Skirycz, A., Brearley, C.A., Dörmann, P., Mueller-Roeber, B. (2005) Arabidopsis AtDGK7, the smallest member of plant diacylglycerol kinases, displays unique biochemical features and saturates at low substrate concentration: the DGK inhibitor R59022 differentially affects AtDGK2 and AtDGK7 activity in vitro and alters plant growth and development. J. Biol. Chem. 280, 34888-34899. PMID: 1681412.

• Lin, W.-H., Wang, Y., Mueller-Roeber, B., Brearley, C.A., Xu, Z.-H., Xue, H.-W. (2005) At5Ptase13 modulates cotyledon vein development through regulating auxin homeostasis. Plant Physiol. 139, 1677-1691. Epub 2005 Nov 18. PMID: 16299182.

• Riano-Pachon, D., Dreyer, I., Mueller-Roeber, B. (2005) Orphan transcripts in Arabidopsis thaliana: identification of several hundred previously unrecognised genes. Plant J. 43, 205-212. PMID: 15998307.

• Xu, J., Brearley, C.A., Lin, W.H., Wang, Y., Ye, R., Mueller-Roeber, B., Xu, Z.H., Xue, H.W. (2005) A role of Arabidopsis inositol polyphosphate kinase, AtIPK2α, in pollen germination and root growth. Plant Physiol. 137, 94-103.

• Dreyer, I., Mueller-Roeber, B., Koehler, B. (2005) Voltage-gated ion channels. In: Membrane Transport in Plants; Series: Annual Plant Reviews Vol. 15; Ed. M.R. Blatt; Blackwell Publishing,  150-192.

• Müller-Röber, B., Riano-Pachon, D.M., Ruzicic, S., Skirycz, A., Caldana, C., Witt, I., Zanor, M.-I. (2005) Pflanzliche Regulatorproteine. BioForum 6, 32-34.

• Hucho, F., Brockhoff, K., van den Daele, W., Köchy, K, Reich, J., Rheinberger, H.-J., Müller-Röber, B., Sperling, K., Wobus, A.M., Boysen, M., Kölsch, M. (2005) Gentechnologiebericht - Analyse einer Hochtechnologie in Deutschland. Elsevier Spektrum, 579 Seiten.

2004

• Gómez-Merino, F.C., Brearley, C.A., Ornatowska, M., Abdel-Haliem, M.E.F., Zanor, M.-I., Mueller-Roeber, B. (2004) AtDGK2, a novel diacylglycerol kinase from Arabidopsis thaliana, phosphorylates 1-stearoyl-2-arachidonoyl-sn-glycerol and 1,2-dioleoyl-sn-glycerol, and exhibits cold-inducible gene expression. J. Biol. Chem. 279, 8230 - 8241. PMID: 14665624.

• Dreyer, I., Poree, I., Schneider, A., Mittelstädt, J., Bertl, A., Sentenac, H., Thibaud, J.-B., Mueller-Roeber, B. (2004) Assembly of plant Shaker-like Kout channels requires two distinct sites of the channel alpha-subunit. Biophys. J. 87, 858-872. PMID: 15298894.

• Becker, D., Geiger, D., Dunkel, D., Roller, M., Bertl, A., Latz, A., Carpaneto, A., Dietrich, P., Roelfsema, M.R., Voelker, C., Schmidt, D., Mueller-Roeber, B., Czempinski, K., Hedrich, R. (2004) AtTPK4, an Arabidopsis "open-rectifying" K+ channel, poised to control the pollen membrane voltage in a pH- and Ca2+-dependent manner. Proc. Natl. Acad. Sci. USA 101, 15621-15626. PMID: 15505206.

• Köhler, B., Mueller-Roeber, B. (2004) Remote control: cell and organ communication within plants. New Phytologist 161(2), 321-324.

• Bender Machado, L., Bäuerlein, M., Carrari, F., Schauer, N., Lytovchenko, A., Gibon, Y., Kelly, A.A., Ehlers Loureiro, M., Müller-Röber, B., Willmitzer, L., Fernie, A.R. (2004). Expression of a yeast acetyl CoA hydrolase in the mitochondrion of tobacco plants inhibits growth and restricts photosynthesis. Plant Mol. Biol. 55, 645-662. PMID: 15604707.

2003

• Gómez-Merino, F. C., Ornatowska, M., Abdel-Haliem, M. E. F., Zanor, M.-I., and Mueller Roeber, B. (2003). In Proceedings of the XIIth Congress on Genes, Gene Families and Isozymes. Berlin, Germany, Monduzzi Ed. pp. 247-250.

• Hunt, L., Mills, L.N., Pical, C., Leckie, C.P., Aitken, F.L., Kopka, J., Mueller-Roeber, B., McAinsh, M.R., Hetherington, A.M., Gray, J.E. (2003) Phospholipase C is required for the control of stomatal aperture by ABA. Plant J. 34, 47-55. PMID: 12662308.

• Xia, H.-J., Brearley, C., Kaplan, B., Fromm, H., Mueller-Roeber, B. (2003): Arabidopsis Inositol Polyphosphate 6-/3-Kinase Is a Nuclear Protein that Complements a Yeast Mutant Lacking a Functional ArgR-Mcm1 Transcription Complex. Plant Cell 15, 449-463. PMID: 12566584.

• Dreyer, I., Mueller-Roeber, B. and Köhler, B. (2003). New challenges in plant ion transport research: From molecules to phenomena. In: Recent Research Developments in Molecular & Cellular Biology, Research Signpost, vol. 3, pp. 379-395.

2002

• Klein, M., Perfus-Barbeoch, L., Frelet, A., Gaedeke, N., Reinhardt, D., Mueller-Roeber, B., Martinoia, E., Forestier, C. (2002) The plant multidrug resistance ABC transporter AtMRP5 is involved in guard cell hormonal signalling and water use. Plant J. 33, 119-129. PMID: 12943546.

• Mueller-Roeber, B., Pical, C. (2002) Inositol phospholipid metabolism in Arabidopsis: Characterised and putative isoforms of inositol phospholipid kinase and phosphoinositide-specific phospholipase C. Plant Physiol. 130, 22-46. PMID: 12226484.

• Czempinski, K., Frachisse, J.-M., Maurel, C., Barbier-Brygoo, H., Mueller-Roeber, B. (2002) Vaculoar membrane localization of the Arabidopsis ´two-pore´ K+ channel KCO1. Plant J. 29, 809-820. PMID: 12148538.

• Moshelion, M., Becker, D., Czempinski, K., Mueller-Roeber, B., Hedrich, R., Attali, B., Moran, N. (2002) Diurnal and circadian regulation of putative potassium channels in a leaf moving organ. Plant Physiol. 128, 634-642. PMID: 11842166.

• Mueller-Roeber, B. (2002) Bioplastik, Phytofarming und andere grüne Wunder: Neue Wege in der Pflanzenzucht. In: Wohin die Reise geht ... - Lebenswissenschaften im Dialog.