Publications
Kappel C, Friedrich T, Oberkofler V, Jiang L, Crawford T, Lenhard M, Bäurle I (2023). Genomic and epigenomic determinants of heat stress-induced transcriptional memory in Arabidopsis. Genome Biology 24,129. doi: 10.1186/s13059-023-02970-5.
Bäurle I, Laplaze L, Martin A (2023). Preparing for an uncertain future: molecular responses of plants facing climate change. Journal of Experimental Botany 74,1297-1302. doi: 10.1093/jxb/erac493.
Oberkofler V, Bäurle I (2022). Inducible epigenome editing probes for the role of histone H3K4 methylation in Arabidopsis heat stress memory. Plant Physiology 189, 703-714. doi: 10.1093/plphys/kiac113.
Perrella G, Bäurle I, van Zanten M (2022). Epigenetic regulation of thermomorphogenesis and heat stress tolerance. New Phytologist 234, 1144-1160. doi: 10.1111/nph.17970.
Friedrich T, Oberkofler V, Trindade I, Altmann S, Brzezinka K, Lämke J, Gorka M, Kappel K, Sokolowska E, Skirycz A, Graf A, Bäurle I (2021) Heteromeric HSFA2/HSFA3 complexes drive transcriptional memory after heat stress in Arabidopsis. Nature Communications, 12, 3426. doi: 10.1038/s41467-021-23786-6.
Oberkofler V, Pratx L, Bäurle I (2021). Epigenetic regulation of abiotic stress memory: maintaining the good things while they last. Current Opinion in Plant Biology 61, 102007. doi: 10.1016/j.pbi.2021.102007.
Urrea Castellanos R, Petrovic N, Altmann S, Brzezinka K, GorkaM, Graf A, Bäurle I. (2020). FORGETTER2 protein phosphatase and phospholipase D modulate heat stress memory in Arabidopsis. Plant Journal 104, 7-17. Doi: 10.1111/tpj.14927.
Bloomer RH, Hutchison CE, Bäurle I, Walker J, Fang X, Perera P, Velanis CN, Gümüs S, Spanos C, Rappsilber J, Feng X, Goodrich J, Dean C (2020). The Arabidopsis epigenetic regulator ICU11 as an accessory protein of Polycomb Repressive Complex 2. Proc Natl Acad Sci U S A 117, 16660-16666. Doi: 10.1073/pnas.1920621117.
Bäurle I, Trindade I (2020). Chromatin regulation of somatic abiotic stress memory. Journal of Experimental Botany 71, 5269-5279. Doi: 10.1093/jxb/eraa098.
Liu J, Feng L, Gu X, Deng X, Qiu Q, Li Q, Zhang Y, Wang M, Deng Y, Wang E, He Y, Bäurle I, Li J, Cao X, He Z (2019) An H3K27me3 demethylase-HSFA2 Regulatory Loop Orchestrates Transgenerational Thermomemory in Arabidopsis. Cell Research 29, 379-390. DOI: 10.1038/s41422-019-0145-8.
Friedrich T, Faivre L, Bäurle I, Schubert D (2019) Chromatin-based mechanisms of temperature memory in plants. Plant Cell & Environment 42, 762-770. DOI: 10.1111/pce.13373.
Brzezinka K, Altmann S, Bäurle I (2019). BRUSHY1/TONSOKU/MGOUN3 is required for heat stress memory. Plant Cell & Environment 42, 771-781. DOI: 10.1111/pce.13365.
Liu HC, Lämke J, Lin SY, Hung MJ, Liu, KM, Charng YY, Bäurle I (2018) Distinct heat shock factors and chromatin modifications mediate the organ-autonomous transcriptional memory of heat stress. Plant Journal 95, 401-413. DOI: 10.1111/tpj.13958.
Bäurle I (2017). CAN’T REMEMBER TO FORGET YOU: Chromatin-based priming of somatic stress responses. Seminars in Cell and Developmental Biology, in press. doi: 10.1016/j.semcdb.2017.09.032.
Lämke J, Bäurle I (2017). Epigenetic and chromatin responses to environmental stress and stress memory in plants. Genome Biology 18, 124. doi: 10.1186/s13059-017-1263-6.
Brzezinka K, Altmann S, Czesnick H, Nicolas P, Górka M, Benke E, Kabelitz T, Jähne F, Graf A, Kappel C, Bäurle I (2016). Arabidopsis FORGETTER1 mediates stress-induced chromatin memory through nucleosome remodeling. eLife 5, e17061. doi: 10.7554/eLife.17061.
Huu CN, Kappel C, Keller B, Sicard S, Takebayashi Y, Breuninger H, Nowak MD, Bäurle I, Himmelbach A, Burkart M, Ebbing-Lohaus T, Sakakibara H, Altschmied L, Conti E, Lenhard M (2016). Presence versus absence of CYP734A50 underlies the style-length dimorphism in primroses. eLife 5, e17956. doi: 10.7554/eLife.17956.
Bäurle I. Plant Heat Adaptation: priming in response to heat stress (2016). F1000Research. Apr 18;5. pii: F1000 Faculty Rev-694. doi: 10.12688/f1000research.7526.1.
Lämke J, Brzezinka K, Bäurle I (2016). HSFA2 orchestrates transcriptional dynamics after heat stress in Arabidopsis thaliana. Transcription 7, 111-114.
Kabelitz T, Brzezinka K, Friedrich T, Gorka M, Graf A, Kappel C, Bäurle I (2016). A jumonji protein with E3 ligase and histone H3 binding activities affects transposon silencing in Arabidopsis. Plant Physiology 171, 344-358.
Lämke J, Brzezinka K, Altmann S, Bäurle I (2016). A hit-and-run heat shock factor governs sustained histone methylation and transcriptional stress memory. EMBO J. 35, 162-175.
Hilker M, Schwachtje J, Baier M, Balazadeh S, Bäurle I, Geiselhardt S, Hincha, DK, Kunze R, Mueller-Roeber B, Rillig MC, Rolff J, Romeis T, Schmülling T, Steppuhn A, van Dongen J, Withcomb S, Wurst S, Zuther E and Kopka J (2015). Priming and memory of stress responses in organisms without a nervous system. Biological Reviews, doi: 10.1111/brv.12215.
Kabelitz T, Bäurle I (2015). Get the Jump – Do 3’UTRs protect transposable elements from silencing? Mobile Genetic Elements 5, 51-54.
Kabelitz T, Kappel C, Henneberger K, Benke E, Nöh C, Bäurle I (2014). eQTL mapping of transposon silencing reveals a position-dependent stable escape from epigenetic silencing and transposition of AtMu1 in the Arabidopsis thaliana lineage. Plant Cell 26, 3261-3271.
Stief A, Brzezinka K, Lämke J, Bäurle I (2014). Epigenetic responses to heat stress at different time scales and the involvement of short RNAs. Plant Signaling & Behavior 9, e970430.
Stief A, Altmann S, Hoffmann K, Pant BD, Scheible W-R, Bäurle I (2014). Arabidopsis miR156 regulates tolerance to recurring environmental stress through SPL transcription factors. Plant Cell 26, 1792-1807.
Sicard A, Stacey N, Hermann K, Dessoly J, Neuffer B, Bäurle I, Lenhard M (2011). Genetics, evolution, and adaptive significance of the selfing syndrome in the genus Capsella. Plant Cell 23, 3156-71.
Sonmez C, Bäurle I, Magusin A, Dreos R, Laubinger S, Weigel D, Dean C (2011). RNA 3' processing functions of Arabidopsis FCA and FPA limit intergenic transcription. Proceedings of the National Academy of Science USA 108, 8508-8513.
Geraldo N, Bäurle I, Kidou SI, Hu X and Dean C (2009). FRIGIDA delays flowering in Arabidopsis via a co-transcriptional mechanism involving direct interaction with the nuclear cap binding complex. Plant Physiology 150, 1611-1618.
Manzano D, Marquardt S, Jones AME, Bäurle I, Liu F and Dean C (2009). Altered interactions within FY/AtCPSF complexes required for Arabidopsis FCA-mediated chromatin silencing. Proceedings of the National Academy of Science USA 106, 8772-8777.
Bäurle I and Dean C (2008). Differential interactions of the autonomous pathway RRM proteins and chromatin regulators in the silencing of Arabidopsis targets. PLoS ONE 3, e2733-2741.
Liu F, Quesada V, Crevillen P, Bäurle I, Swiezewski S and Dean C (2007). The Arabidopsis RNA binding protein FCA requires a Lysine Specific Demethylase 1 homologue to effect FLC down-regulation. Molecular Cell 28, 398-407.
Bäurle I*, Smith L, Baulcombe D and Dean C* (2007). Widespread role for the flowering time regulators FCA and FPA in RNA-mediated chromatin silencing. Science318, 109-112. *corresponding authors
Bäurle I and Dean C (2006). The Timing of Developmental Transitions in Plants. Cell 125, 655-664.
Bäurle I and Laux T (2005). Regulation of WUSCHEL transcription in the stem cell niche of the Arabidopsis shoot meristem. Plant Cell 17, 2271-2280.
Bäurle I and Laux T (2003). Apical meristems: The plant’s fountain of youth. Bioessays25, 961-970.
Hamann T, Benkova E, Bäurle I, Kientz M, and Jürgens G (2002). The Arabidopsis BODENLOS gene encodes an auxin response protein inhibiting MONOPTEROS-mediated embryo patterning. Genes & Development 16, 1610-1615.
Sweere U, Eichenberg K, Lohrmann J, Mira-Rodado V, Bäurle I, Kudla J, Nagy F, Schäfer E, and Harter K (2001). Interaction of the response regulator ARR4 with phytochrome B in modulating red light signaling. Science 294, 1108-1111.
Lohrmann J, Sweere U, Zabaleta E, Bäurle I, Keitel C, Kozma-Bognar L, Brennicke A, Schäfer E, Kudla J, and Harter K (2001). The response regulator ARR2: a pollen-specific transcription factor involved in the expression of nuclear genes for components of mitochondrial ComplexI in Arabidopsis. Molecular Genetics and Genomics 265, 2-13.
Eichenberg K, Bäurle I, Paulo N, Sharrock RA, Rüdiger W, and Schäfer E (2000). Phytochromes C and E have different spectral characteristics from those of phytochromes A and B. FEBS Letters 470, 107-112.
Lohrmann J, Buchholz G, Keitel C, Sweere U, Kircher S, Bäurle I, Kudla J, Schäfer E, and Harter K (1999). Differential expression and nuclear localization of response regulator-like proteins from Arabidopsis thaliana. Plant Biology1, 495-505.
Scagliarini S, Rotino L, Bäurle I, Asard H, Pupillo P, and Trost P (1998). Initial purification study of bean hypocotyl plasma membrane. Protoplasma 205, 66-73.