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Publications 2007


C.J. Baxter, H. Redestig, N. Schauer, D. Repsilber, K.R. Patil, J. Nielsen, J. Selbig, J. Liu, A.R. Fernie and L.J. Sweetlove (2007)
The Metabolic Response of Heterotrophic Arabidopsis Cells to Oxidative Stress.
Plant Physiology 143, 312–325.

S. Dworschak, S. Grell, V. Nikiforova, T. Schaub and J. Selbig (2007)
Modeling Biological Networks by Action Languages via Answer Set Programming.
Constraints 13, 21–65.

C. Falter, A. Schliep, J. Selbig, M. Vingron and D. Walther (2007)
German Conference on Bioinformatics : GCB 2007, 26. - 28.9.2007 in Potsdam, Germany.
Gesellschaft für Informatik.

S. Grimbs, J. Selbig, S. Bulik, H.-G. Holzhütter and R. Steuer (2007)
The stability and robustness of metabolic states: identifying stabilizing sites in metabolic networks.
Molecular Systems Biology 3.

J. Hummel, M. Niemann, S. Wienkoop, W. Schulze, D. Steinhauser, J. Selbig, D. Walther and W. Weckwerth (2007)
ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites.
BMC bioinformatics 8, 216.

J. Hummel, J. Selbig, D. Walther and J. Kopka (2007)
The Golm Metabolome Database: a database for GC-MS based metabolite profiling.
18In J. Nielsen and M. Jewett (ed.): Topics in Current Genetics,Springer Berlin / Heidelberg, 75–95.

R.C. Meyer, M. Steinfath, J. Lisec, M. Becher, H. Witucka-Wall, O. Törjék, O. Fiehn, Ä. Eckardt, L. Willmitzer, J. Selbig and T. Altmann (2007)
The metabolic signature related to high plant growth rate in Arabidopsis thaliana.
Proceedings of the National Academy of Sciences 104, 4759–4764.

H. Redestig, D. Repsilber, F. Sohler and J. Selbig (2007)
Integrating Functional Knowledge during Sample Clustering for Microarray Data using Unsupervised Decision Trees.
Biometrical Journal 49, 214–229.

H. Redestig, F. Sohler, R. Zimmer and J. Selbig (2007)
Unsupervised Decision Trees Structured by Gene Ontology (GO-UDTs) for the Interpretation of Microarray Data.
In R. Decker, H.J. Lenz, H.-H. Bock, W. Gaul and M. Vichi (ed.): Studies in Classification, Data Analysis, and Knowledge Organization,Springer Berlin Heidelberg, Berlin, Heidelberg, 585–592.

H. Redestig, D. Weicht, J. Selbig and M.A. Hannah (2007)
Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana.
BMC bioinformatics 8, 454.

M. Scholz and J. Selbig (2007)
Visualization and analysis of molecular data.
Methods in molecular biology (Clifton, N.J.) 358, 87–104.

W. Stacklies, H. Redestig, M. Scholz, D. Walther and J. Selbig (2007)
pcaMethods—a bioconductor package providing PCA methods for incomplete data.
Bioinformatics 23, 1164–1167.

M. Steinfath, D. Repsilber, M. Scholz, D. Walther and J. Selbig (2007)
Integrated data analysis for genome-wide research.
Plant Systems Biology. Birkhauser-Verlag, Basel, Boston, Berlin, 309–329.

R. Steuer, K. Morgenthal, W. Weckwerth and J. Selbig (2007)
A gentle guide to the analysis of metabolomic data.
Methods in molecular biology (Clifton, N.J.) 358, 105–126.

R. Steuer, A.N. Nesi, A.R. Fernie, T. Gross, B. Blasius and J. Selbig (2007)
From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle.
Bioinformatics 23, 1378–1385.

D. Walther, R. Brunnemann and J. Selbig (2007)
The Regulatory Code for Transcriptional Response Diversity and Its Relation to Genome Structural Properties in A. thaliana.
PLoS Genet 3, e11.