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Publications 2005


M. Balduin, S. Sierra, M.P. Däumer, J.K. Rockstroh, M. Oette, G. Fätkenheuer, B. Kupfer, N. Beerenwinkel, D. Hoffmann, J. Selbig, H.J. Pfister and R. Kaiser (2005)
Evolution of HIV resistance during treatment interruption in experienced patients and after restarting a new therapy.
Journal of clinical virology: the official publication of the Pan American Society for Clinical Virology 34, 277–287.

N. Beerenwinkel, M. Däumer, T. Sing, J. Rahnenfuhrer, T. Lengauer, J. Selbig, D. Hoffmann and R. Kaiser (2005)
Estimating HIV evolutionary pathways and the genetic barrier to drug resistance.
The Journal of infectious diseases 191, 1953–1960.

N. Beerenwinkel, J. Rahnenführer, M. Däumer, D. Hoffmann, R. Kaiser, J. Selbig and T. Lengauer (2005)
Learning multiple evolutionary pathways from cross-sectional data.
Journal of computational biology: a journal of computational molecular cell biology 12, 584–598.

N. Beerenwinkel, J. Rahnenführer, R. Kaiser, D. Hoffmann, J. Selbig and T. Lengauer (2005)
Mtreemix: a software package for learning and using mixture models of mutagenetic trees.
Bioinformatics 21, 2106–2107.

N. Beerenwinkel, T. Sing, T. Lengauer, J. Rahnenführer, K. Roomp, I. Savenkov, R. Fischer, D. Hoffmann, J. Selbig, K. Korn, H. Walter, T. Berg, P. Braun, G. Fätkenheuer, M. Oette, J. Rockstroh, B. Kupfer, R. Kaiser and M. Däumer (2005)
Computational methods for the design of effective therapies against drug resistant HIV strains.
Bioinformatics (Oxford, England) 21, 3943–3950.

J. Hummel, N. Keshvari, W. Weckwerth and J. Selbig (2005)
Species-specific analysis of protein sequence motifs using mutual information.
BMC bioinformatics 6, 164.

M. Jacobsen, D. Repsilber, A. Gutschmidt, A. Neher, K. Feldmann, H.J. Mollenkopf, A. Ziegler and S.H.E. Kaufmann (2005)
Ras-associated small GTPase 33A, a novel T cell factor, is down-regulated in patients with tuberculosis.
The Journal of infectious diseases 192, 1211–1218.

S. Kloska, P. Krüger and J. Selbig (2005)
Lotus japonicus expression database.
In e. Lotus japonicus handbook A.J. Marques (ed.):Springer, Dodrecht, 148–154.

K. Morgenthal, S. Wienkoop, M. Scholz, J. Selbig and W. Weckwerth (2005)
Correlative GC-TOF-MS-based metabolite profiling and LC-MS-based protein profiling reveal time-related systemic regulation of metabolite–protein networks and improve pattern recognition for multiple biomarker selection.
Metabolomics 1, 109–121.

M. Scholz, F. Kaplan, C.L. Guy, J. Kopka and J. Selbig (2005)
Non-linear PCA: a missing data approach.
Bioinformatics (Oxford, England) 21, 3887–3895.

R. Steuer, C. Daub, J. Selbig and J. Kurths (2005)
Measuring Distances Between Variables by Mutual Information.
In D. Baier, K.-D. Wernecke, H.-H. Bock, W. Gaul and M. Vichi (ed.): Studies in Classification, Data Analysis, and Knowledge Organization,Springer Berlin Heidelberg, 81–90.

B. Usadel, A. Nagel, O. Thimm, H. Redestig, O.E. Blaesing, N. Palacios-Rojas, J. Selbig, J. Hannemann, M.C. Piques, D. Steinhauser, W.-R. Scheible, Y. Gibon, R. Morcuende, D. Weicht, S. Meyer and M. Stitt (2005)
Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses.
Plant physiology 138, 1195–1204.